[ 源代码： r-cran-bio3d ]
软件包：r-cran-bio3d（2.4-1-1 以及其他的）
GNU R package for biological structure analysis
The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.
其他与 r-cran-bio3d 有关的软件包
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- dep: libc6 (>= 2.4)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
- GCC 支持库
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- dep: libstdc++6 (>= 5.2)
- GNU 标准 C++ 库，第3版
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- dep: r-api-4.0
- 本虚包由这些包填实： r-base-core
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- dep: r-base-core (>= 4.0.0-3)
- GNU R core of statistical computation and graphics system
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- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
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- dep: zlib1g (>= 1:1.1.4)
- 压缩库 - 运行时
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- rec: clustalo
- General-purpose multiple sequence alignment program for proteins
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- rec: dssp
- protein secondary structure assignment based on 3D structure
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- rec: muscle
- Multiple alignment program of protein sequences
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- rec: mustang
- multiple structural alignment of proteins
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- rec: r-cran-testthat (>= 0.9.1)
- GNU R testsuite
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- sug: r-bioc-biostrings
- GNU R string objects representing biological sequences
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- sug: r-cran-bigmemory
- Manage Massive Matrices with Shared Memory and Memory-Mapped Files
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- sug: r-cran-httr
- GNU R tools for working with URLs and HTTP
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- sug: r-cran-igraph
- GNU R network analysis and visualization
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-lattice
- GNU R package for 'Trellis' graphics
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- sug: r-cran-ncdf4
- GNU R interface to Unidata netCDF format data files
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- sug: r-cran-rcurl
- GNU R General network (HTTP/FTP/...) client interface
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- sug: r-cran-xml
- GNU R package for XML parsing and generation