软件包：miniasm（0.3+dfsg-2）

[ 源代码： miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

标签: 生物学: 核酸, 领域: 生物学, field::biology:bioinformatics, implemented-in::c, 用户接口: 命令行, 角色: role::program, science::calculation, Purpose: 分布式计算, use::comparing, works-with::biological-sequence

其他与 miniasm 有关的软件包

• dep: libc6 (>= 2.4)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  压缩库 - 运行时

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

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硬件架构	软件包大小	安装后大小	文件
armel	28.3 kB	66.0 kB	[文件列表]