软件包：maffilter（1.3.1+dfsg-2 以及其他的）

[ 源代码： maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

其他与 maffilter 有关的软件包

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libbpp-core4 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.4)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC 支持库

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

下载 maffilter

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
armel	1.3.1+dfsg-2+b1	218.3 kB	1,148.0 kB	[文件列表]