软件包：r-bioc-monocle（2.18.0-1）

[ 源代码： r-bioc-monocle  ]

clustering, differential expression, and trajectory analysis for RNA-Seq

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data. It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

其他与 r-bioc-monocle 有关的软件包

• dep: libc6 (>= 2.17)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC 支持库

• dep: libstdc++6 (>= 5.2)

  GNU 标准 C++ 库，第3版

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.12

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

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• dep: r-bioc-biobase

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• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocviews

  Categorized views of R package repositories

• dep: r-bioc-hsmmsinglecell (>= 0.101.5)

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• dep: r-bioc-limma

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• dep: r-cran-cluster

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• dep: r-cran-combinat

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• dep: r-cran-ddrtree (>= 0.1.4)

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• dep: r-cran-densityclust (>= 0.3)

  GNU R clustering by fast search and find of density peaks

• dep: r-cran-dplyr

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• dep: r-cran-fastica

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• dep: r-cran-ggplot2 (>= 1.0.0)

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• dep: r-cran-igraph (>= 1.0.1)

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• dep: r-cran-irlba (>= 2.0.0)

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  GNU R package of Venables and Ripley's MASS

• dep: r-cran-matrix (>= 1.2-6)

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-matrixstats

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• dep: r-cran-pheatmap

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• dep: r-cran-plyr

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• dep: r-cran-proxy

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• dep: r-cran-qlcmatrix

  GNU R utility sparse matrix functions for quantitative language

• dep: r-cran-rann (>= 2.5)

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• dep: r-cran-rcpp (>= 0.12.0)

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• dep: r-cran-reshape2

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• dep: r-cran-slam

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• dep: r-cran-stringr

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• dep: r-cran-tibble

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• dep: r-cran-vgam (>= 1.0-6)

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• dep: r-cran-viridis

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• rec: r-cran-testthat

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• sug: r-bioc-destiny

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• sug: r-bioc-scater

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• sug: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• sug: r-cran-knitr

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• sug: r-cran-seurat

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硬件架构	软件包大小	安装后大小	文件
arm64	1,433.2 kB	1,739.0 kB	[文件列表]