[ 源代码： pairtools ]
软件包：python3-pairtools（0.3.0-2 以及其他的）
Framework to process sequencing data from a Hi-C experiment
Simple and fast command-line framework to process sequencing data from a Hi-C experiment.
Process pair-end sequence alignments and perform the following operations:
- Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
sequences of Hi-C DNA molecules
- Sort .pairs files for downstream analyses
- Detect, tag and remove PCR/optical duplicates
- Generate extensive statistics of Hi-C datasets
- Select Hi-C pairs given flexibly defined criteria
- Restore .sam alignments from Hi-C pairs
其他与 python3-pairtools 有关的软件包
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- dep: cython3
- C-Extensions for Python 3
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- dep: libc6 (>= 2.17)
- GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
- dep: python3 (<< 3.10)
- dep: python3 (>= 3.9~)
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-nose
- test discovery and running for Python3 unittest
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- dep: python3-numpy
- Fast array facility to the Python 3 language