在 bullseye 发行版中 arm64 硬件架构下的 paleomix 软件包文件清单

/usr/bin/paleomix
/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/entry_points.txt
/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/not-zip-safe
/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/requires.txt
/usr/lib/python3/dist-packages/paleomix-1.3.2.egg-info/top_level.txt
/usr/lib/python3/dist-packages/paleomix/__init__.py
/usr/lib/python3/dist-packages/paleomix/atomiccmd/__init__.py
/usr/lib/python3/dist-packages/paleomix/atomiccmd/builder.py
/usr/lib/python3/dist-packages/paleomix/atomiccmd/command.py
/usr/lib/python3/dist-packages/paleomix/atomiccmd/pprint.py
/usr/lib/python3/dist-packages/paleomix/atomiccmd/sets.py
/usr/lib/python3/dist-packages/paleomix/common/__init__.py
/usr/lib/python3/dist-packages/paleomix/common/argparse.py
/usr/lib/python3/dist-packages/paleomix/common/bamfiles.py
/usr/lib/python3/dist-packages/paleomix/common/bedtools.py
/usr/lib/python3/dist-packages/paleomix/common/fileutils.py
/usr/lib/python3/dist-packages/paleomix/common/formats/__init__.py
/usr/lib/python3/dist-packages/paleomix/common/formats/_common.py
/usr/lib/python3/dist-packages/paleomix/common/formats/_graph.py
/usr/lib/python3/dist-packages/paleomix/common/formats/fasta.py
/usr/lib/python3/dist-packages/paleomix/common/formats/fastq.py
/usr/lib/python3/dist-packages/paleomix/common/formats/msa.py
/usr/lib/python3/dist-packages/paleomix/common/formats/newick.py
/usr/lib/python3/dist-packages/paleomix/common/formats/phylip.py
/usr/lib/python3/dist-packages/paleomix/common/logging.py
/usr/lib/python3/dist-packages/paleomix/common/makefile.py
/usr/lib/python3/dist-packages/paleomix/common/procs.py
/usr/lib/python3/dist-packages/paleomix/common/rtools.py
/usr/lib/python3/dist-packages/paleomix/common/sampling.py
/usr/lib/python3/dist-packages/paleomix/common/sequences.py
/usr/lib/python3/dist-packages/paleomix/common/system.py
/usr/lib/python3/dist-packages/paleomix/common/testing.py
/usr/lib/python3/dist-packages/paleomix/common/text.py
/usr/lib/python3/dist-packages/paleomix/common/timer.py
/usr/lib/python3/dist-packages/paleomix/common/utilities.py
/usr/lib/python3/dist-packages/paleomix/common/vcffilter.py
/usr/lib/python3/dist-packages/paleomix/common/vcfwrap.py
/usr/lib/python3/dist-packages/paleomix/common/versions.py
/usr/lib/python3/dist-packages/paleomix/main.py
/usr/lib/python3/dist-packages/paleomix/node.py
/usr/lib/python3/dist-packages/paleomix/nodegraph.py
/usr/lib/python3/dist-packages/paleomix/nodes/__init__.py
/usr/lib/python3/dist-packages/paleomix/nodes/adapterremoval.py
/usr/lib/python3/dist-packages/paleomix/nodes/bedtools.py
/usr/lib/python3/dist-packages/paleomix/nodes/bowtie2.py
/usr/lib/python3/dist-packages/paleomix/nodes/bwa.py
/usr/lib/python3/dist-packages/paleomix/nodes/commands.py
/usr/lib/python3/dist-packages/paleomix/nodes/examl.py
/usr/lib/python3/dist-packages/paleomix/nodes/formats.py
/usr/lib/python3/dist-packages/paleomix/nodes/mafft.py
/usr/lib/python3/dist-packages/paleomix/nodes/mapdamage.py
/usr/lib/python3/dist-packages/paleomix/nodes/newick.py
/usr/lib/python3/dist-packages/paleomix/nodes/phylip.py
/usr/lib/python3/dist-packages/paleomix/nodes/picard.py
/usr/lib/python3/dist-packages/paleomix/nodes/raxml.py
/usr/lib/python3/dist-packages/paleomix/nodes/samtools.py
/usr/lib/python3/dist-packages/paleomix/nodes/sequences.py
/usr/lib/python3/dist-packages/paleomix/nodes/validation.py
/usr/lib/python3/dist-packages/paleomix/pipeline.py
/usr/lib/python3/dist-packages/paleomix/pipelines/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/config.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/makefile.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/mkfile.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/nodes.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/lane.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/library.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/prefix.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/reads.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/sample.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/statistics.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/summary.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/parts/target.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/paths.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/pipeline.py
/usr/lib/python3/dist-packages/paleomix/pipelines/bam/trim_pipeline.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/config.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/example.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/makefile.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/mkfile.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/parts/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/parts/genotype.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/parts/msa.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/parts/phylo.py
/usr/lib/python3/dist-packages/paleomix/pipelines/phylo/pipeline.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/build_db.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/build_mito.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/build_tped.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/common.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/config.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/database.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/__init__.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/admixture.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/common.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/mitochondria.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/nuclear.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/report.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/parts/summary.py
/usr/lib/python3/dist-packages/paleomix/pipelines/zonkey/pipeline.py
/usr/lib/python3/dist-packages/paleomix/resources/__init__.py
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_01.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_02.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_03.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R1_04.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_01.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_02.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_03.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L1_R2_04.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.collapsed.truncated.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/ACGATA_L2/reads.singleton.truncated.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_01.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_02.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/GCTCTG_L1_R1_03.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_01.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_02.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L1_R1_03.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_01.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_02.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R1_03.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_01.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_02.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/data/TGCTCA_L2_R2_03.fastq.gz
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/makefile.yaml
/usr/lib/python3/dist-packages/paleomix/resources/examples/bam_pipeline/prefixes/rCRS.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/makefile.yaml
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/bonobo.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/chimpanzee.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/gorilla.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/rCRS.fasta.fai
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/sumatran_orangutan.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/prefixes/white_handed_gibbon.fasta
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/alignment/setup.sh
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.non_coding.bed
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/data/regions/rCRS.protein_coding.CDS.bed
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/phylogeny/makefile.yaml
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/setup.sh
/usr/lib/python3/dist-packages/paleomix/resources/examples/phylo_pipeline/synthesize_reads.py
/usr/lib/python3/dist-packages/paleomix/resources/reports/zonkey/report.css
/usr/lib/python3/dist-packages/paleomix/resources/rscripts/common/requires.r
/usr/lib/python3/dist-packages/paleomix/resources/rscripts/zonkey/admixture.r
/usr/lib/python3/dist-packages/paleomix/resources/rscripts/zonkey/coverage.r
/usr/lib/python3/dist-packages/paleomix/resources/rscripts/zonkey/pca.r
/usr/lib/python3/dist-packages/paleomix/resources/rscripts/zonkey/tinytree.r
/usr/lib/python3/dist-packages/paleomix/resources/rscripts/zonkey/treemix.r
/usr/lib/python3/dist-packages/paleomix/tools/__init__.py
/usr/lib/python3/dist-packages/paleomix/tools/bam_stats/__init__.py
/usr/lib/python3/dist-packages/paleomix/tools/bam_stats/common.py
/usr/lib/python3/dist-packages/paleomix/tools/bam_stats/coverage.py
/usr/lib/python3/dist-packages/paleomix/tools/cleanup.py
/usr/lib/python3/dist-packages/paleomix/tools/coverage.py
/usr/lib/python3/dist-packages/paleomix/tools/depths.py
/usr/lib/python3/dist-packages/paleomix/tools/dupcheck.py
/usr/lib/python3/dist-packages/paleomix/tools/factory.py
/usr/lib/python3/dist-packages/paleomix/tools/gtf_to_bed.py
/usr/lib/python3/dist-packages/paleomix/tools/rmdup_collapsed.py
/usr/lib/python3/dist-packages/paleomix/tools/validate_fastq.py
/usr/lib/python3/dist-packages/paleomix/tools/vcf_filter.py
/usr/lib/python3/dist-packages/paleomix/tools/vcf_to_fasta.py
/usr/lib/python3/dist-packages/paleomix/yaml.py
/usr/share/doc/paleomix/README.rst
/usr/share/doc/paleomix/README.test
/usr/share/doc/paleomix/changelog.Debian.gz
/usr/share/doc/paleomix/changelog.gz
/usr/share/doc/paleomix/copyright
/usr/share/doc/paleomix/run-unit-test
/usr/share/doc/paleomix/tests/README.rst
/usr/share/doc/paleomix/tests/atomiccmd_test/__init__.py
/usr/share/doc/paleomix/tests/atomiccmd_test/builder_test.py.gz
/usr/share/doc/paleomix/tests/atomiccmd_test/command_test.py.gz
/usr/share/doc/paleomix/tests/atomiccmd_test/pprint_test.py.gz
/usr/share/doc/paleomix/tests/atomiccmd_test/sets_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/__init__.py
/usr/share/doc/paleomix/tests/common_tests/bedtools_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/formats_tests/__init__.py
/usr/share/doc/paleomix/tests/common_tests/formats_tests/fasta_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/formats_tests/fastq_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/formats_tests/msa_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/formats_tests/newick_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/formats_tests/phylip_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/makefile_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/sampling_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/sequences_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/text_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/utilities_test.py.gz
/usr/share/doc/paleomix/tests/common_tests/versions_test.py.gz
/usr/share/doc/paleomix/tests/data/empty_file_1
/usr/share/doc/paleomix/tests/data/empty_file_2
/usr/share/doc/paleomix/tests/data/rCRS.fasta.fai
/usr/share/doc/paleomix/tests/data/rCRS.fasta.gz
/usr/share/doc/paleomix/tests/node_test.py.gz
/usr/share/doc/paleomix/tests/nodegraph_test.py.gz
/usr/share/doc/paleomix/tests/tools_test/factory_test.py
/usr/share/lintian/overrides/paleomix
/usr/share/man/man1/bam_pipeline.1.gz
/usr/share/man/man1/bam_rmdup_collapsed.1.gz
/usr/share/man/man1/conv_gtf_to_bed.1.gz
/usr/share/man/man1/paleomix.1.gz
/usr/share/man/man1/phylo_pipeline.1.gz
/usr/share/man/man1/trim_pipeline.1.gz