[ 源代码： macsyfinder ]
软件包：macsyfinder（2.0~rc1-3 以及其他的）
detection of macromolecular systems in protein datasets
MacSyFinder is a program to model and detect macromolecular systems, genetic pathways... in protein datasets. In prokaryotes, these systems have often evolutionarily conserved properties: they are made of conserved components, and are encoded in compact loci (conserved genetic architecture). The user models these systems with MacSyFinder to reflect these conserved features, and to allow their efficient detection
This package presents the Open Source Java API to biological databases and a series of mostly sequence-based algorithms.
其他与 macsyfinder 有关的软件包
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- dep: hmmer
- profile hidden Markov models for protein sequence analysis
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- dep: libjs-jquery
- JavaScript library for dynamic web applications
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- dep: libjs-sphinxdoc (>= 2.4.3-5~)
- JavaScript support for Sphinx documentation
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- dep: libjs-underscore
- JavaScript's functional programming helper library
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- 交互式高级面向对象语言（默认 python3 版本）
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- dep: python3-colorlog
- formatter to use with the logging module of Python 3
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- dep: python3-networkx
- tool to create, manipulate and study complex networks (Python3)
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- dep: python3-packaging
- core utilities for python3 packages
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- dep: python3-yaml
- YAML parser and emitter for Python3
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- dep: sphinx-rtd-theme-common (>= 0.5.1+dfsg)
- sphinx theme from readthedocs.org (common files)