软件包：q2cli（2022.11.1-2）
Click-based command line interface for QIIME 2
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:
* Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line,graphical)
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.
其他与 q2cli 有关的软件包
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-click
- Wrapper around optparse for command line utilities - Python 3.x
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- dep: python3-setuptools
- Python3 Distutils Enhancements
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- dep: q2-feature-table (>= 2021.11.1)
- QIIME 2 plugin supporting operations on feature tables
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- dep: qiime (>= 2021.11.1)
- Quantitative Insights Into Microbial Ecology