软件包：python3-sqt（0.8.0-6 以及其他的）

[ 源代码： python-sqt  ]

SeQuencing Tools for biological DNA/RNA high-throughput data

sqt is a collection of command-line tools for working with high-throughput sequencing data. Conceptionally not fixed to use any particular language, many sqt subcommands are currently implemented in Python. For them, a Python package is available with functions for reading and writing FASTA/FASTQ files, computing alignments, quality trimming, etc.

The following tools are offered:

 * sqt-coverage -- Compute per-reference statistics such as coverage
   and GC content
 * sqt-fastqmod -- FASTQ modifications: shorten, subset, reverse
   complement, quality trimming.
 * sqt-fastastats -- Compute N50, min/max length, GC content etc. of
   a FASTA file
 * sqt-qualityguess -- Guess quality encoding of one or more FASTA files.
 * sqt-globalalign -- Compute a global or semiglobal alignment of two strings.
 * sqt-chars -- Count length of the first word given on the command line.
 * sqt-sam-cscq -- Add the CS and CQ tags to a SAM file with colorspace reads.
 * sqt-fastamutate -- Add substitutions and indels to sequences in a
   FASTA file.
 * sqt-fastaextract -- Efficiently extract one or more regions from an
   indexed FASTA file.
 * sqt-translate -- Replace characters in FASTA files (like the 'tr'
   command).
 * sqt-sam-fixn -- Replace all non-ACGT characters within reads in a
   SAM file.
 * sqt-sam-insertsize -- Mean and standard deviation of paired-end
   insert sizes.
 * sqt-sam-set-op -- Set operations (union, intersection, ...) on
   SAM/BAM files.
 * sqt-bam-eof -- Check for the End-Of-File marker in compressed
   BAM files.
 * sqt-checkfastqpe -- Check whether two FASTQ files contain correctly
   paired paired-end data.

其他与 python3-sqt 有关的软件包

• dep: libc6 (>= 2.14) [amd64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [除 amd64, arm64, ppc64el]

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.11~)

• dep: python3-cutadapt

  Clean biological sequences from high-throughput sequencing reads (Python 3)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-seaborn

  statistical visualization library for Python3

• dep: python3-xopen

  Python3 module to open compressed files transparently

• rec: fonts-noto-color-emoji

  color emoji font from Google

下载 python3-sqt

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	0.8.0-6+b1	116.6 kB	393.0 kB	[文件列表]
arm64	0.8.0-6+b1	109.3 kB	421.0 kB	[文件列表]
armel	0.8.0-6+b1	106.2 kB	370.0 kB	[文件列表]
armhf	0.8.0-6+b1	105.5 kB	322.0 kB	[文件列表]
i386	0.8.0-6+b1	117.1 kB	395.0 kB	[文件列表]
mips64el	0.8.0-6+b1	106.6 kB	426.0 kB	[文件列表]
mipsel	0.8.0-6+b1	105.3 kB	419.0 kB	[文件列表]
ppc64el	0.8.0-6+b1	118.6 kB	485.0 kB	[文件列表]