软件包：python3-pairix（0.3.7-6 以及其他的）

[ 源代码： python-pairix  ]

1D/2D indexing and querying with a pair of genomic coordinates

Pairix is a tool for indexing and querying on a block-compressed text file containing pairs of genomic coordinates.

Pairix is a stand-alone C program that was written on top of tabix as a tool for the 4DN-standard pairs file format describing Hi-C data: pairs_format_specification.md

However, Pairix can be used as a generic tool for indexing and querying any bgzipped text file containing genomic coordinates, for either 2D- or 1D- indexing and querying.

For example: given the custom text file below, you want to extract specific lines from the Pairs file further below. An awk command would read the Pairs file from beginning to end. Pairix creates an index and uses it to access the file from a relevant position by taking advantage of bgzf compression, allowing for a fast query on large files.

其他与 python3-pairix 有关的软件包

• dep: python3 (<< 3.12)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.11~)

下载 python3-pairix

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	0.3.7-6+b1	40.4 kB	116.0 kB	[文件列表]
arm64	0.3.7-6+b1	37.6 kB	156.0 kB	[文件列表]
armel	0.3.7-6+b1	35.6 kB	102.0 kB	[文件列表]
armhf	0.3.7-6+b1	34.6 kB	86.0 kB	[文件列表]
i386	0.3.7-6+b1	44.0 kB	122.0 kB	[文件列表]
mips64el	0.3.7-6+b1	36.8 kB	162.0 kB	[文件列表]
mipsel	0.3.7-6+b1	38.0 kB	160.0 kB	[文件列表]
ppc64el	0.3.7-6+b1	46.8 kB	156.0 kB	[文件列表]