[ 源代码： python-cobra ]
软件包：python3-cobra（0.26.2-1）
constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses.
其他与 python3-cobra 有关的软件包
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- dep: python-cobra-data (= 0.26.2-1)
- constraint-based modeling of biological networks (data)
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-appdirs (<< 2)
- determining appropriate platform-specific directories (Python 3)
- dep: python3-appdirs (>= 1.4)
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- dep: python3-depinfo
- retrieve and print Python 3 package dependencies
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- dep: python3-diskcache
- Python3 module for disk and file backed persistent cache
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- dep: python3-future
- Clean single-source support for Python 3 and 2 - Python 3.x
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- dep: python3-httpx
- next generation HTTP client
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- dep: python3-importlib-resources
- Read resources from Python packages
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- dep: python3-numpy
- Fast array facility to the Python 3 language
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- dep: python3-optlang
- sympy based mathematical programming language (Python 3)
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- dep: python3-pandas
- data structures for "relational" or "labeled" data
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- dep: python3-pydantic
- Data validation and settings management using Python type hinting
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- dep: python3-rich
- render rich text, tables, progress bars, syntax highlighting, markdown and more
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- dep: python3-ruamel.yaml
- roundtrip YAML parser/emitter (Python 3 module)
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- dep: python3-sbml5
- System Biology Markup Language library - Python3 bindings
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- dep: python3-simplejson
- simple, fast, extensible JSON encoder/decoder for Python 3.x
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- dep: python3-swiglpk (>= 4.65.1)
- Plain Python bindings for the GNU Linear Programming Kit (Python 3)
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- sug: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
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- sug: qsopt-ex
- Exact linear programming solver