[ 源代码： bcbio ]
软件包：python3-bcbio（1.2.9-2） [contrib]
library for analysing high-throughput sequencing data
This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis.
A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology.
其他与 python3-bcbio 有关的软件包
|
|
|
|
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-biopython
- Python3 library for bioinformatics
-
- dep: python3-cyvcf2
- VCF parser based on htslib (Python 3)
-
- dep: python3-joblib
- tools to provide lightweight pipelining in Python
-
- dep: python3-logbook
- logging system for Python that replaces the standard library's module (Python 3)
-
- dep: python3-matplotlib
- Python based plotting system in a style similar to Matlab (Python 3)
-
- dep: python3-psutil
- module providing convenience functions for managing processes (Python3)
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: python3-requests
- elegant and simple HTTP library for Python3, built for human beings
-
- dep: python3-scipy
- scientific tools for Python 3
-
- dep: python3-six
- Python 2 and 3 compatibility library
-
- dep: python3-tornado
- scalable, non-blocking web server and tools - Python 3 package
-
- rec: cnvkit
- Copy number variant detection from targeted DNA sequencing
-
- rec: gsort
- sort genomic data
-
- rec: libfreetype6
- FreeType 2 font engine, shared library files
-
- rec: libhts-dev
- development files for the HTSlib
-
- rec: lumpy-sv
- general probabilistic framework for structural variant discovery
-
- rec: mosdepth
- BAM/CRAM depth calculation biological sequencing
-
- rec: multiqc
- output integration for RNA sequencing across tools and samples
-
- rec: python3-arrow
- Python3 library to manipulate dates, times, and timestamps
-
- rec: python3-geneimpacts
- wraps command line tools to assess variants in gene sequences
-
- rec: python3-h5py
- general-purpose Python interface to hdf5
-
- rec: python3-pyvcf
- 本虚包由这些包填实： python3-vcf
-
- rec: python3-seqcluster
- analysis of small RNA in NGS data
-
- rec: python3-statsmodels
- Python3 module for the estimation of statistical models
-
- rec: python3-tabulate
- pretty-print tabular data in Python3
-
- rec: r-bioc-purecn
- copy number calling and SNV classification using targeted short read sequencing
-
- rec: r-bioc-titancna
- Subclonal copy number and LOH prediction from whole genome sequencing
-
- rec: r-other-wasabi
- prepare Sailfish and Salmon output for downstream analysis using GNU R
-
- rec: seqan-apps
- C++ library for the analysis of biological sequences
-
- rec: snpeff
- genetic variant annotation and effect prediction toolbox - tool
-
- rec: vcfanno
- annotate a VCF with other VCFs/BEDs/tabixed files
-
- rec: vt
- toolset for short variant discovery in genetic sequence data
-
- sug: bcbio-doc
- 软件包暂时不可用
-
- sug: python3-bioblend
- CloudMan and Galaxy API library (Python 3)
-
- sug: python3-dnapilib
- adapter prediction for small RNA sequencing - library
-
- sug: python3-msgpack
- Python 3 implementation of MessagePack format