全部搜索项
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ 源代码: kmer  ]

软件包:atac(0~20150903+r2013-8 以及其他的)

atac 的相关链接

Screenshot

Debian 的资源:

下载源码包 kmer

维护小组:

外部的资源:

相似软件包:

genome assembly-to-assembly comparison

atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.

The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.

Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.

This package is part of the Kmer suite.

其他与 atac 有关的软件包

  • 依赖
  • 推荐
  • 建议
  • 增强

下载 atac

下载可用于所有硬件架构的
硬件架构 版本 软件包大小 安装后大小 文件
mips64el 0~20150903+r2013-8+b3 385.8 kB3,666.0 kB [文件列表]