软件包：libtfbs-perl（0.7.1+ds-2 以及其他的）

[ 源代码： libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

标签: 软件开发: Perl 开发, 函数库, 领域: field::biology, field::biology:bioinformatics, 实做语言: C, implemented-in::perl, interface::commandline, 角色: 开发用函数库, 程序

其他与 libtfbs-perl 有关的软件包

• dep: bioperl

  用于处理计算分子生物学的 Perl 工具

• dep: libc6 (>= 2.14) [amd64]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.22) [ppc64el]

  dep: libc6 (>= 2.7) [除 amd64, arm64, ppc64el]

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: pdl (>= 1:2.080-3+b1)

  perl data language: Perl extensions for numerics

• dep: pdlapi-20

  本虚包由这些包填实： pdl

• dep: perl (>= 5.36.0-4)

  拉里 沃尔的实用报表提取语言(Perl)

• dep: perlapi-5.36.0

  本虚包由这些包填实： perl-base

• rec: libgd-gd2-perl

  本虚包由这些包填实： libgd-perl

  或者 libgd-gd2-noxpm-perl

  本虚包由这些包填实： libgd-perl

下载 libtfbs-perl

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	0.7.1+ds-2+b2	226.2 kB	990.0 kB	[文件列表]
arm64	0.7.1+ds-2+b2	226.5 kB	1,038.0 kB	[文件列表]
armel	0.7.1+ds-2+b2	227.4 kB	1,038.0 kB	[文件列表]
armhf	0.7.1+ds-2+b2	225.8 kB	1,038.0 kB	[文件列表]
i386	0.7.1+ds-2+b2	226.9 kB	990.0 kB	[文件列表]
mips64el	0.7.1+ds-2+b2	226.4 kB	1,039.0 kB	[文件列表]
mipsel	0.7.1+ds-2+b2	226.5 kB	1,039.0 kB	[文件列表]
ppc64el	0.7.1+ds-2+b2	227.3 kB	1,038.0 kB	[文件列表]
s390x	0.7.1+ds-2+b2	226.3 kB	990.0 kB	[文件列表]