[ 源代码： resfinder ]
软件包：resfinder（4.3.0-1）
resfinder 的相关链接
Debian 的资源：
下载源码包 resfinder：
- [resfinder_4.3.0-1.dsc]
- [resfinder_4.3.0.orig-debian-tests-data.tar.xz]
- [resfinder_4.3.0.orig.tar.xz]
- [resfinder_4.3.0-1.debian.tar.xz]
维护小组：
外部的资源：
- 主页 [bitbucket.org]
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identify acquired antimicrobial resistance genes
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
其他与 resfinder 有关的软件包
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- dep: kma
- mapping genomic sequences to raw reads directly against redundant databases
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- dep: ncbi-blast+-legacy
- NCBI Blast legacy call script
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-cgecore
- Python3 module for the Center for Genomic Epidemiology
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- dep: python3-cgelib
- Python3 code to be utilized across the CGE tools
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- dep: python3-dateutil
- powerful extensions to the standard Python 3 datetime module
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- dep: python3-git
- Python library to interact with Git repositories
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- dep: python3-tabulate
- pretty-print tabular data in Python3
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- dep: resfinder-db
- ResFinder database is a curated database of acquired resistance genes