软件包：r-bioc-tfbstools（1.36.0+dfsg-2）

[ 源代码： r-bioc-tfbstools  ]

GNU R Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

其他与 r-bioc-tfbstools 有关的软件包

• dep: libc6 (>= 2.4)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: r-api-4.0

  本虚包由这些包填实： r-base-core

• dep: r-api-bioc-3.16

  本虚包由这些包填实： r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-biobase (>= 2.28)

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• dep: r-bioc-biocgenerics (>= 0.14.0)

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• dep: r-bioc-biocparallel (>= 1.2.21)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.36.4)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.36.3)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-cner (>= 1.4.0)

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• dep: r-bioc-dirichletmultinomial (>= 1.10.0)

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• dep: r-bioc-genomeinfodb (>= 1.6.1)

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• dep: r-bioc-genomicranges (>= 1.20.6)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.2.7)

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• dep: r-bioc-rtracklayer (>= 1.28.10)

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• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-seqlogo (>= 1.34.0)

  GNU R sequence logos for DNA sequence alignments

• dep: r-bioc-xvector (>= 0.8.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-catools (>= 1.17.1)

  GNU R package providing various utility functions

• dep: r-cran-dbi (>= 0.6)

  GNU R package providing a generic database interface

• dep: r-cran-gtools (>= 3.5.0)

  GNU R package with R programming tools by Greg Warnes et al

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: r-cran-tfmpvalue (>= 0.0.5)

  GNU R P-Value Computation for Position Weight Matrices

• dep: r-cran-xml (>= 3.98-1.3)

  GNU R package for XML parsing and generation

• sug: r-bioc-biocstyle (>= 1.7.7)

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• sug: r-cran-knitr (>= 1.11)

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• sug: r-cran-rmarkdown

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• sug: r-cran-testthat

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硬件架构	软件包大小	安装后大小	文件
i386	931.2 kB	1,794.0 kB	[文件列表]