软件包：crac（2.5.2+dfsg-5 以及其他的）

[ 源代码： crac  ]

integrated RNA-Seq read analysis

CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.

其他与 crac 有关的软件包

• dep: libc6 (>= 2.34)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386]

  GCC 支持库

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libgkarrays1 (>= 2.1.0+dfsg)

  library to query large collection of NGS sequences

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (>= 2.3.0)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 11)

  GNU 标准 C++ 库，第3版

• dep: zlib1g (>= 1:1.1.4)

  压缩库 - 运行时

下载 crac

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	2.5.2+dfsg-5+b1	454.0 kB	2,267.0 kB	[文件列表]
arm64	2.5.2+dfsg-5+b1	434.9 kB	2,306.0 kB	[文件列表]
armel	2.5.2+dfsg-5+b1	416.4 kB	2,240.0 kB	[文件列表]
armhf	2.5.2+dfsg-5+b1	416.2 kB	2,112.0 kB	[文件列表]
i386	2.5.2+dfsg-5+b1	465.7 kB	2,320.0 kB	[文件列表]
mips64el	2.5.2+dfsg-5+b1	473.4 kB	2,484.0 kB	[文件列表]
ppc64el	2.5.2+dfsg-5+b1	481.2 kB	2,500.0 kB	[文件列表]