[ 源代码： parsnp ]
软件包：parsnp（1.7.4+dfsg-2）
rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
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- dep: fasttree
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- dep: libc6 (>= 2.34)
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同时作为一个虚包由这些包填实： libc6-udeb
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- dep: libgcc-s1 (>= 3.5)
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- dep: libmuscle1 (>= 3.7+4565)
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- dep: libstdc++6 (>= 11)
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- dep: mummer
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- dep: phipack
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- dep: python3-numpy
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