Пакунок: miniasm (0.3+dfsg-4)

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Homepage [github.com]

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ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Інші пакунки пов'язані з miniasm

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dep: libc6 (>= 2.34)

Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
dep: zlib1g (>= 1:1.1.4)

Бібліотека стискання даних (виконавчий модуль)

rec: minimap

tool for approximate mapping of long biosequences such as DNA reads

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