Пакунок: r-bioc-annotationhub (3.12.0+dfsg-1)

[ Source: r-bioc-annotationhub  ]

GNU R client to access AnnotationHub resources

This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

Інші пакунки пов'язані з r-bioc-annotationhub

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.19

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocfilecache (>= 2.12.0)

  GNU R management of files across sessions

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocversion (>= 3.19.1)

  set the appropriate version of Bioconductor packages

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-biocmanager

  access the Bioconductor project package repository

• dep: r-cran-curl

  GNU R modern and flexible web client for R

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-rappdirs

  GNU R application directories

• dep: r-cran-rsqlite

  Database Interface R driver for SQLite

• dep: r-cran-yaml

  Methods to convert R data to YAML and back

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• sug: r-bioc-ensembldb (>= 2.28.0)

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-bioc-experimenthub (>= 2.12.0)

  BioConductor client to access ExperimentHub resources

• sug: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• sug: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• sug: r-bioc-rsamtools (>= 2.20.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• sug: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• sug: r-bioc-variantannotation (>= 1.50.0)

  BioConductor annotation of genetic variants

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

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