Пакунок: jellyfish-examples (2.3.1-3)
Links for jellyfish-examples
Debian Resources:
Download Source Package jellyfish:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Shaun Jackman (QA Page)
- Andreas Tille (QA Page)
- Michael R. Crusoe (QA Page)
- Étienne Mollier (QA Page)
External Resources:
- Homepage [www.genome.umd.edu]
Similar packages:
count k-mers in DNA sequences (examples for testing)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains examples to test the package
Інші пакунки пов'язані з jellyfish-examples
|
|
|
|
-
- rec: jellyfish
- count k-mers in DNA sequences
Завантажити jellyfish-examples
| Архітектура | Розмір пакунка | Розмір після встановлення | Файли |
|---|---|---|---|
| all | 13.5 kB | 60.0 kB | [список файлів] |