Пакунок: r-bioc-tfbstools (1.44.0+dfsg-2 and others)

[ Source: r-bioc-tfbstools  ]

GNU R Transcription Factor Binding Site (TFBS) Analysis

TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It can also scan putative TFBS from sequence/alignment, query JASPAR database and provides a wrapper of de novo motif discovery software.

Інші пакунки пов'язані з r-bioc-tfbstools

• dep: libc6 (>= 2.16) [x32]

  Бібліотека GNU C: спільні бібліотеки
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.28) [sh4]

  dep: libc6 (>= 2.4) [amd64, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.1.3) [alpha]

  Бібліотека GNU C: спільні бібліотеки
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: r-api-3.5 [sh4, sparc64]

  Пакунок недоступний

• dep: r-api-4.0 [not sh4, sparc64]

  virtual package provided by r-base-core

• dep: r-api-bioc-3.16 [x32]

  Пакунок недоступний

• dep: r-api-bioc-3.18 [hppa, ia64]

  Пакунок недоступний

• dep: r-api-bioc-3.20 [not hppa, ia64, sh4, sparc64, x32]

  virtual package provided by r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sh4, sparc64]

  Пакунок недоступний

• dep: r-base-core (>= 3.5.2-1) [sh4, sparc64]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biobase (>= 2.28)

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.14.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.2.21)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.36.4)

  GNU R string objects representing biological sequences

• dep: r-bioc-bsgenome (>= 1.36.3)

  BioConductor infrastructure for Biostrings-based genome data packages

• dep: r-bioc-cner (>= 1.4.0)

  CNE Detection and Visualization

• dep: r-bioc-dirichletmultinomial (>= 1.10.0)

  Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data

• dep: r-bioc-genomeinfodb (>= 1.6.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.20.6)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.2.7)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-pwalign [not hppa, ia64, sh4, sparc64, x32]

  Perform pairwise sequence alignments

• dep: r-bioc-rtracklayer (>= 1.28.10)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.9.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-seqlogo (>= 1.34.0)

  GNU R sequence logos for DNA sequence alignments

• dep: r-bioc-xvector (>= 0.8.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-catools (>= 1.17.1)

  GNU R package providing various utility functions

• dep: r-cran-dbi (>= 0.6)

  GNU R package providing a generic database interface

• dep: r-cran-gtools (>= 3.5.0)

  GNU R package with R programming tools by Greg Warnes et al

• dep: r-cran-rsqlite (>= 1.0.0)

  Database Interface R driver for SQLite

• dep: r-cran-tfmpvalue (>= 0.0.5)

  GNU R P-Value Computation for Position Weight Matrices

• dep: r-cran-xml (>= 3.98-1.3)

  GNU R package for XML parsing and generation

• sug: r-bioc-biocstyle (>= 1.7.7) [not sh4, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr (>= 1.11)

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown [not sh4, sparc64]

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

Завантажити r-bioc-tfbstools

Завантаження для всіх доступних архітектур

Архітектура	Версія	Розмір пакунка	Розмір після встановлення	Файли
alpha (unofficial port)	1.44.0+dfsg-2	1,000.3 kB	1,913.0 kB	[список файлів]
amd64	1.44.0+dfsg-2	1,000.3 kB	1,865.0 kB	[список файлів]
arm64	1.44.0+dfsg-2	1,000.2 kB	1,913.0 kB	[список файлів]
hppa (unofficial port)	1.40.0+dfsg-1	979.8 kB	1,836.0 kB	[список файлів]
ia64 (unofficial port)	1.40.0+dfsg-1	980.6 kB	1,841.0 kB	[список файлів]
mips64el	1.44.0+dfsg-2	1,000.2 kB	1,913.0 kB	[список файлів]
ppc64 (unofficial port)	1.44.0+dfsg-2	1,000.9 kB	1,913.0 kB	[список файлів]
ppc64el	1.44.0+dfsg-2	1,000.7 kB	1,913.0 kB	[список файлів]
riscv64	1.44.0+dfsg-2	1,000.1 kB	1,857.0 kB	[список файлів]
s390x	1.44.0+dfsg-2	1,000.7 kB	1,861.0 kB	[список файлів]
sh4 (unofficial port)	1.20.0+dfsg-1	874.6 kB	1,736.0 kB	[список файлів]
sparc64 (unofficial port)	1.20.0+dfsg-1	874.2 kB	1,737.0 kB	[список файлів]
x32 (unofficial port)	1.36.0+dfsg-2	987.8 kB	1,852.0 kB	[список файлів]