Пакунок: ssake (4.0.1-2)

Links for ssake

Debian Resources:

Download Source Package ssake:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Charles Plessy (QA Page)

External Resources:

Homepage [www.bcgsc.ca]

Similar packages:

genomics application for assembling millions of very short DNA sequences

The Short Sequence Assembly by K-mer search and 3′ read Extension (SSAKE) is a genomics application for aggressively assembling millions of short nucleotide sequences by progressively searching for perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to help leverage the information from short sequences reads by stringently clustering them into contigs that can be used to characterize novel sequencing targets.

Tags: Field: Biology, Implemented in: Perl, implemented-in::python, interface::commandline, User Interface: Command Shell, Role: role::program, scope::utility, Purpose: Analysing

Інші пакунки пов'язані з ssake

depends

recommends

suggests

enhances

dep: libperl4-corelibs-perl

libraries historically supplied with Perl 4
dep: perl

Мова Практичного Видобування та Побудування Звітів Лари Уолла (Larry Wall)
dep: python3

interactive high-level object-oriented language (default python3 version)

sug: ssake-examples

example data for SSAKE, a genomic assembler of short reads

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