Пакунок: r-bioc-dexseq (1.52.0+dfsg-1)

[ Source: r-bioc-dexseq  ]

Експериментальний пакунок

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

GNU R inference of differential exon usage in RNA-Seq

The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.

Інші пакунки пов'язані з r-bioc-dexseq

• dep: r-api-4.0

  Пакунок недоступний

• dep: r-api-bioc-3.20

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• dep: r-bioc-deseq2 (>= 1.39.6)

  R package for RNA-Seq Differential Expression Analysis

• dep: r-bioc-genefilter

  methods for filtering genes from microarray experiments

• dep: r-bioc-geneplotter

  R package of functions for plotting genomic data

• dep: r-bioc-genomicranges (>= 1.23.7)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.5.17)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.23.18)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• dep: r-cran-stringr

  Make it easier to work with strings

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-glmgampoi

  GNU R fit a Gamma-Poisson generalized linear model

• sug: r-bioc-txdbmaker

  Tools for making TxDb objects from genomic annotations

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-roxygen2

  in-line documentation for GNU R

• sug: r-cran-testthat

  GNU R testsuite

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