Пакунок: r-bioc-scater (1.34.0+ds-1)

[ Source: r-bioc-scater  ]

Експериментальний пакунок

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

Single-Cell Analysis Toolkit for Gene Expression Data in R

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Інші пакунки пов'язані з r-bioc-scater

• dep: r-api-4.0

  Пакунок недоступний

• dep: r-api-bioc-3.20

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocneighbors

  Nearest Neighbor Detection for Bioconductor Packages

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-matrixgenerics

  S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-sparsearray

  efficient in-memory representation of multidimensional sparse arrays

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-ggbeeswarm

  GNU R categorical scatter (violin point) plots

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcppml

  GNU R Rcpp Machine Learning Library

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-uwot

  GNU R uniform manifold approximation and projection (UMAP)

• dep: r-cran-viridis

  GNU R package for color maps from matplotlib

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• sug: r-bioc-densvis

  density-preserving data visualization via non-linear dimensionality reduction

• sug: r-bioc-scrnaseq

  Collection of Public Single-Cell RNA-Seq Datasets

• sug: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-robustbase

  GNU R package providing basic robust statistics

• sug: r-cran-scattermore

  GNU R scatterplots with more points

• sug: r-cran-testthat

  GNU R testsuite

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