Пакунок: r-bioc-degreport (1.42.0+dfsg-1)

[ Source: r-bioc-degreport  ]

Експериментальний пакунок

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

BioConductor report of DEG analysis

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Інші пакунки пов'язані з r-bioc-degreport

• dep: r-api-4.0

  Пакунок недоступний

• dep: r-api-bioc-3.20

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-complexheatmap

  make complex heatmaps using GNU R

• dep: r-bioc-consensusclusterplus

  GNU R determining cluster count and membership

• dep: r-bioc-deseq2

  R package for RNA-Seq Differential Expression Analysis

• dep: r-bioc-edger

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-broom

  convert statistical analysis objects into tidy data frames with GNU R

• dep: r-cran-circlize

  Circular Visualization

• dep: r-cran-cluster

  GNU R package for cluster analysis by Rousseeuw et al

• dep: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• dep: r-cran-dendextend

  Extending 'dendrogram' Functionality in GNU R

• dep: r-cran-dplyr

  GNU R grammar of data manipulation

• dep: r-cran-ggdendro

  GNU R create dendrograms and tree diagrams using 'ggplot2'

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• dep: r-cran-logging

  GNU R logging package

• dep: r-cran-magrittr

  GNU R forward-pipe operator

• dep: r-cran-psych

  GNU R procedures for psychological, psychometric, and personality research

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-reshape

  Flexibly reshape data

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• dep: r-cran-stringi

  GNU R character string processing facilities

• dep: r-cran-stringr

  Make it easier to work with strings

• dep: r-cran-tibble

  GNU R Simple Data Frames

• dep: r-cran-tidyr

  GNU R package to easily tidy data

• sug: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-limma

  linear models for microarray data

• sug: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-statmod

  GNU R package providing algorithms and functions for statistical modeling

• sug: r-cran-testthat

  GNU R testsuite

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