[ Source: ea-utils ]
Пакунок: ea-utils (1.1.2+dfsg-9 and others)
Links for ea-utils
Debian Resources:
Download Source Package ea-utils:
Maintainers:
External Resources:
- Homepage [expressionanalysis.github.io]
Similar packages:
command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological sequencing data, barcode demultiplexing, adapter trimming, etc.
Primarily written to support an Illumina based pipeline - but should work with any FASTQs.
Main Tools are:
* fastq-mcfScans a sequence file for adapters, and, based on a log-scaled threshold, determines a set of clipping parameters and performs clipping. Also does skewing detection and quality filtering.
* fastq-multxDemultiplexes a fastq. Capable of auto-determining barcode id's based on a master set fields. Keeps multiple reads in-sync during demultiplexing. Can verify that the reads are in-sync as well, and fail if they're not.
* fastq-joinSimilar to audy's stitch program, but in C, more efficient and supports some automatic benchmarking and tuning. It uses the same "squared distance for anchored alignment" as other tools.
* varcallTakes a pileup and calculates variants in a more easily parameterized manner than some other tools.
Інші пакунки пов'язані з ea-utils
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- dep: libc6 (>= 2.34)
- Бібліотека GNU C: спільні бібліотеки
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]
- Допоміжна бібліотека GCC
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [i386, mipsel]
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- dep: libgsl27 (>= 2.7.1)
- GNU Scientific Library (GSL) -- library package
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- dep: libstdc++6 (>= 11)
- Стандартна бібліотека C++ GNU, версії 3
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-cran-formula
- GNU R package for extended model formulas
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- dep: r-cran-getopt
- GNU R package providing command-line parsing functionality
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- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- dep: r-cran-hmisc
- GNU R miscellaneous functions by Frank Harrell
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- dep: r-cran-lattice
- GNU R package for 'Trellis' graphics
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- dep: r-cran-survival
- GNU R package for survival analysis
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- dep: zlib1g (>= 1:1.2.3.3)
- Бібліотека стискання даних (виконавчий модуль)
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- rec: med-config (>= 2.1)
- Debian Med general config package
Завантажити ea-utils
Архітектура | Версія | Розмір пакунка | Розмір після встановлення | Файли |
---|---|---|---|---|
amd64 | 1.1.2+dfsg-9+b2 | 230.6 kB | 747.0 kB | [список файлів] |
arm64 | 1.1.2+dfsg-9+b2 | 208.9 kB | 1,003.0 kB | [список файлів] |
armel | 1.1.2+dfsg-9+b2 | 208.8 kB | 996.0 kB | [список файлів] |
armhf | 1.1.2+dfsg-9+b2 | 205.7 kB | 740.0 kB | [список файлів] |
i386 | 1.1.2+dfsg-9+b2 | 242.5 kB | 760.0 kB | [список файлів] |
mips64el | 1.1.2+dfsg-9+b2 | 229.8 kB | 1,094.0 kB | [список файлів] |
mipsel | 1.1.2+dfsg-9+b2 | 233.5 kB | 1,084.0 kB | [список файлів] |
ppc64el | 1.1.2+dfsg-9+b2 | 241.5 kB | 1,323.0 kB | [список файлів] |
s390x | 1.1.2+dfsg-9+b2 | 212.0 kB | 747.0 kB | [список файлів] |