Пакунок: mapdamage (2.2.1+dfsg-3)

[ Source: mapdamage  ]

tracking and quantifying damage patterns in ancient DNA sequences

MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.

Інші пакунки пов'язані з mapdamage

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  or libblas-dev

  Basic Linear Algebra Subroutines 3, static library

  or libatlas-base-dev

  Automatically Tuned Linear Algebra Software, generic static

  or libblas.so

  virtual package provided by libatlas-base-dev, libblas-dev, libblis-openmp-dev, libblis-pthread-dev, libblis-serial-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  or liblapack-dev

  Library of linear algebra routines 3 - static version

  or libatlas-base-dev

  Automatically Tuned Linear Algebra Software, generic static

  or liblapack.so

  virtual package provided by libatlas-base-dev, liblapack-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-gam

  Generalized Additive Models for R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-inline

  GNU R package to inline C, C++, Fortran functions from R

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppgsl

  GNU R package for integration with the GNU GSL

• dep: seqtk

  Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

Завантажити mapdamage

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