Package: clustalx (2.1+lgpl-9 and others)

[ Source: clustalx  ]

Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Interface Toolkit: Lesstif/Motif, uitoolkit::qt, use::analysing, Purpose: Comparing, use::viewing, works-with-format::plaintext, Works with: Need an extra tag, X Window System: Application

Other Packages Related to clustalx

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC support library

• dep: libqt5core5t64 (>= 5.7.0)

  Qt 5 core module

• dep: libqt5gui5t64 (>= 5.2.0)

  Qt 5 GUI module

  or libqt5gui5-gles (>= 5.2.0)

  Qt 5 GUI module — OpenGL ES variant

• dep: libqt5widgets5t64 (>= 5.0.2)

  Qt 5 widgets module

• dep: libqt5xml5t64 (>= 5.0.2)

  Qt 5 XML module

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• sug: boxshade

  Pretty-printing of multiple sequence alignments

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: texlive-latex-extra

  TeX Live: LaTeX additional packages

Download clustalx

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
armhf	2.1+lgpl-9+b1	390.7 kB	962.0 kB	[list of files]