Paket: svim (2.0.0-3)

[ Källkod: svim  ]

Structural variant caller for long sequencing reads

SVIM is a structural variant caller for long sequencing reads. It is able to detect, classify and genotype five different classes of structural variants. Unlike existing methods, SVIM integrates information from across the genome to precisely distinguish similar events, such as tandem and interspersed duplications and simple insertions.

Andra paket besläktade med svim

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-cpuinfo

  Python module for getting CPU info (Python 3)

• dep: python3-edlib

  library for sequence alignment using edit distance (Python3 module)

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-pyspoa

  Python bindings to spoa

• dep: python3-scipy

  scientific tools for Python 3

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	33,6 kbyte	259,0 kbyte	[filförteckning]