Paket: resfinder (4.4.2-2)

[ Källkod: resfinder  ]

identify acquired antimicrobial resistance genes

ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.

ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.

Andra paket besläktade med resfinder

• dep: kma

  mapping genomic sequences to raw reads directly against redundant databases

• dep: ncbi-blast+-legacy

  NCBI Blast legacy call script

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-cgecore

  Python3 module for the Center for Genomic Epidemiology

• dep: python3-cgelib

  Python3 code to be utilized across the CGE tools

• dep: python3-dateutil

  powerful extensions to the standard Python 3 datetime module

• dep: python3-git

  Python library to interact with Git repositories

• dep: python3-tabulate

  pretty-print tabular data in Python3

• dep: resfinder-db

  ResFinder database is a curated database of acquired resistance genes

Hämta resfinder

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
all	66,4 kbyte	402,0 kbyte	[filförteckning]