Paket: umis (1.0.9-1 och andra)

[ Källkod: umis  ]

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process.

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Andra paket besläktade med umis

• dep: libc6 (>= 2.4)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.12~)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-regex

  alternative regular expression module (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-toolz

  List processing tools and functional utilities

• sug: umis-examples

  tools for processing UMI RNA-tag data (examples)

Hämta umis

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
armel	1.0.9-1+b1	30,8 kbyte	124,0 kbyte	[filförteckning]