Paket: python3-shasta (0.12.0-1 och andra)

[ Källkod: shasta  ]

nanopore whole genome assembly (dynamic library)

De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Computational methods used by the Shasta assembler include:

 * Using a run-length representation of the read sequence. This makes
   the assembly process more resilient to errors in homopolymer
   repeat counts, which are the most common type of errors in Oxford
   Nanopore reads.

 * Using in some phases of the computation a representation of the read
   sequence based on markers, a fixed subset of short k-mers (k ≈ 10).

Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.

This package contains the dynamic library that can be interfaced and imported within Python.

Andra paket besläktade med python3-shasta

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  eller libblas.so.3

  virtuellt paket som tillhandahålls av libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libboost-serialization1.83.0 (>= 1.83.0)

  serialization library for C++

• dep: libc6 (>= 2.38)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC stödbibliotek

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  eller liblapack.so.3

  virtuellt paket som tillhandahålls av liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libpng16-16t64 (>= 1.6.2)

  PNG library - runtime (version 1.6)

• dep: libpython3.12t64 (>= 3.12.1)

  Shared Python runtime library (version 3.12)

• dep: libspoa7.0.0 (>= 4.0.5)

  SIMD partial order alignment library

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3 (<< 3.13)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.12~)

Hämta python3-shasta

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.12.0-1+b1	2.130,0 kbyte	8.057,0 kbyte	[filförteckning]