Källkodspaket: bioperl-run (1.7.3-6)
Länkar för bioperl-run
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- arkitekturoberoende bygg-beroende
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- adep:
debhelper-compat
(= 13)
- Paketet inte tillgängligt
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- idep:
perl
- Larry Wall's Practical Extraction and Report Language
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- idep:
libmodule-build-perl
- framework for building and installing Perl modules
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- idep:
bioperl
(>= 1.7.4)
- Perl tools for computational molecular biology
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- idep:
libalgorithm-diff-perl
- module to find differences between files
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- idep:
libipc-run-perl
- Perl module for running processes
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- idep:
libio-string-perl
- Emulate IO::File interface for in-core strings
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- idep:
libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
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- idep:
libfile-sort-perl
- module to sort a file or merge sort multiple files
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- idep:
libtest-most-perl
- Perl module with the most commonly needed test functions and features
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- idep:
libarray-compare-perl
- Perl module to easily compare arrays
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- idep:
libtree-dagnode-perl
- Perl (super)class for representing nodes in a tree
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- idep:
libbio-cluster-perl
- BioPerl cluster modules
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- idep:
libbio-featureio-perl
- Modules for reading, writing, and manipulating sequence features
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- idep:
libconfig-any-perl
- module to load configuration from different file formats
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- idep:
libbio-tools-run-alignment-clustalw-perl
- Bioperl interface to Clustal W
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- idep:
libbio-eutilities-perl
- BioPerl interface to the Entrez Programming Utilities (E-utilities)
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- idep:
libbio-tools-run-remoteblast-perl
- Object for remote execution of the NCBI Blast via HTTP
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- idep:
amap-align
- Protein multiple alignment by sequence annealing
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- idep:
bedtools
- suite of utilities for comparing genomic features
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- idep:
bedtools-test
- test data for the bedtools package
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- idep:
ncbi-blast+-legacy
- NCBI Blast legacy call script
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- idep:
clustalw
- global multiple nucleotide or peptide sequence alignment
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- idep:
emboss
- European molecular biology open software suite
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- idep:
exonerate
- generic tool for pairwise sequence comparison
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- idep:
hmmer
[any-amd64 any-i386 powerpc ppc64]
- profile hidden Markov models for protein sequence analysis
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- idep:
hyphy-pt
- Hypothesis testing using Phylogenies (pthreads version)
- eller
hyphy-mpi
- Hypothesis testing using Phylogenies (MPI version)
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- idep:
infernal
[any-amd64 any-i386]
- inference of RNA secondary structural alignments
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- idep:
kalign
- Global and progressive multiple sequence alignment
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- idep:
mafft
- Multiple alignment program for amino acid or nucleotide sequences
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- idep:
muscle
- Multiple alignment program of protein sequences
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- idep:
ncoils
- coiled coil secondary structure prediction
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- idep:
phyml
- Phylogenetic estimation using Maximum Likelihood
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- idep:
primer3
- tool to design flanking oligo nucleotides for DNA amplification
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- idep:
probcons
- PROBabilistic CONSistency-based multiple sequence alignment
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- idep:
python3-pybedtools
- Python 3 wrapper around BEDTools for bioinformatics work
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- idep:
raxml
- Randomized Axelerated Maximum Likelihood of phylogenetic trees
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- idep:
samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- idep:
sim4
- tool for aligning cDNA and genomic DNA
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- idep:
tigr-glimmer
- Gene detection in archea and bacteria
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- idep:
wise
- comparison of biopolymers, like DNA and protein sequences
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- idep:
fasttree
- phylogenetic trees from alignments of nucleotide or protein sequences
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- idep:
lagan
- highly parametrizable pairwise global genome sequence aligner
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- idep:
pal2nal
- converts proteins to genomic DNA alignment
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- idep:
pftools
[any-amd64]
- build and search protein and DNA generalized profiles
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- idep:
libwww-perl
- simple and consistent interface to the world-wide web
