Paket: r-bioc-edger (4.2.1+dfsg-1) [debports]

[ Källkod:  ]

Empirical analysis of digital gene expression data in R

Bioconductor package for differential expression analysis of whole transcriptome sequencing (RNA-seq) and digital gene expression profiles with biological replication. It uses empirical Bayes estimation and exact tests based on the negative binomial distribution. It is also useful for differential signal analysis with other types of genome-scale count data.

Andra paket besläktade med r-bioc-edger

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  eller libblas.so.3

  virtuellt paket som tillhandahålls av libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.29)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.0)

  GCC stödbibliotek

• dep: libgfortran5 (>= 8)

  Runtime library for GNU Fortran applications

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  eller liblapack.so.3

  virtuellt paket som tillhandahålls av libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libstdc++6 (>= 14)

  GNU standardbibliotek v3 för C++

• dep: r-api-4.0

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.19

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-bioc-limma (>= 3.60.3)

  linear models for microarray data

• dep: r-cran-locfit

  GNU R local regression, likelihood and density estimation

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• sug: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface for BioConductor

• sug: r-bioc-biobase (>= 2.64.0)

  base functions for Bioconductor

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-org.hs.eg.db (>= 3.19.1)

  genome-wide annotation for Human

• sug: r-bioc-rhdf5 (>= 2.48.0)

  BioConductor HDF5 interface to R

• sug: r-bioc-summarizedexperiment (>= 1.34.0)

  BioConductor assay container

• sug: r-cran-jsonlite

  Robust, High Performance JSON Parser and Generator for R

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-readr

  GNU R package to read rectangular text data

• sug: r-cran-seuratobject

  GNU R data structures for single cell data

Hämta r-bioc-edger

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
sparc64 (inofficiell anpassning)	1.127,0 kbyte	2.234,0 kbyte	[filförteckning]