Paket: maffilter (1.3.1+dfsg-6) [debports]

[ Källkod:  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Andra paket besläktade med maffilter

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

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• dep: libbpp-core4t64 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3t64 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12t64 (>= 2.4.1)

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• dep: libbpp-seq-omics3t64 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12t64 (>= 2.4.1)

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• dep: libbz2-1.0

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• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
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• dep: libgcc-s1 (>= 3.4)

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• dep: libstdc++6 (>= 13.1)

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• dep: zlib1g (>= 1:1.1.4)

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• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

Hämta maffilter

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
sparc64 (inofficiell anpassning)	220,7 kbyte	1.503,0 kbyte	[filförteckning]