Paket: libhts3t64 (1.20+ds-1) [debports]

[ Källkod:  ]

C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

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• dep: libcurl3t64-gnutls (>= 7.18.0)

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• dep: libdeflate0 (>= 1.0)

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• dep: libhtscodecs2 (>= 1.3.0)

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• dep: liblzma5 (>= 5.1.1alpha+20120614)

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• dep: libssl3t64 (>= 3.0.0)

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• dep: zlib1g (>= 1:1.1.4)

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Arkitektur	Paketstorlek	Installerad storlek	Filer
sh4 (inofficiell anpassning)	493,3 kbyte	1.142,0 kbyte	[filförteckning]