Paket: tree-puzzle (5.3~rc16+dfsg-12 och andra)

[ Källkod: tree-puzzle  ]

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Behöver ett märke till

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• dep: libsprng2

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• rec: tree-puzzle-doc

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• sug: phylip

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• sug: treetool

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Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
s390x	5.3~rc16+dfsg-12+b1	177,3 kbyte	440,0 kbyte	[filförteckning]