Paket: r-bioc-drimseq (1.32.0-1)

[ Källkod: r-bioc-drimseq  ]

Differential transcript usage and tuQTL analyses with

Dirichlet-multinomial model in RNA-seq The package provides two frameworks. One for the differential transcript usage analysis between different conditions and one for the tuQTL analysis. Both are based on modeling the counts of genomic features (i.e., transcripts) with the Dirichlet-multinomial distribution. The package also makes available functions for visualization and exploration of the data and results.

Andra paket besläktade med r-bioc-drimseq

• dep: r-api-4.0

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.19

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-edger (>= 4.2.1)

  Empirical analysis of digital gene expression data in R

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-limma (>= 3.60.4)

  linear models for microarray data

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: r-cran-reshape2

  Flexibly reshape data: a reboot of the reshape package

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-testthat

  GNU R testsuite

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	774,7 kbyte	1.028,0 kbyte	[filförteckning]