Paket: roary (3.13.0+dfsg-1)

[ Källkod: roary  ]

high speed stand alone pan genome pipeline

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::perl, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing

Andra paket besläktade med roary

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• dep: mafft

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• dep: mcl

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• dep: ncbi-blast+

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• dep: parallel

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• dep: perl

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• dep: r-base-core

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• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

Hämta roary

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
all	179,4 kbyte	670,0 kbyte	[filförteckning]