Paket: miniasm (0.3+dfsg-4)

[ Källkod: miniasm  ]

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c, User Interface: Command Line, Role: role::program, science::calculation, Purpose: Calculating, use::comparing, works-with::biological-sequence

Andra paket besläktade med miniasm

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• rec: minimap

  tool for approximate mapping of long biosequences such as DNA reads

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Arkitektur	Paketstorlek	Installerad storlek	Filer
ppc64el	31,9 kbyte	83,0 kbyte	[filförteckning]