Paket: brig (0.95+dfsg-3)

[ Källkod: brig  ]

BLAST Ring Image Generator

BRIG can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

 * Images show similarity between a central reference sequence and other
   sequences as concentric rings.
 * BRIG will perform all BLAST comparisons and file parsing automatically
   via a simple GUI.
 * Contig boundaries and read coverage can be displayed for draft genomes;
   customized graphs and annotations can be displayed.
 * Using a user-defined set of genes as input, BRIG can display gene
   presence, absence, truncation or sequence variation in a set of
   complete genomes, draft genomes or even raw, unassembled sequence data.
 * BRIG also accepts SAM-formatted read-mapping files enabling genomic
   regions present in unassembled sequence data from multiple samples to
   be compared simultaneously

Andra paket besläktade med brig

• dep: cgview

  Circular Genome Viewer

• dep: default-jre

  Standard Java or Java compatible Runtime

  eller java6-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre, openjdk-8-jre

  eller java7-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre, openjdk-8-jre

  eller java8-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre, openjdk-8-jre

  eller java9-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre

  eller java10-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre

  eller java11-runtime

  virtuellt paket som tillhandahålls av default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-19-jre, openjdk-20-jre, openjdk-21-jre, openjdk-22-jre, openjdk-23-jre

• dep: jarwrapper (>= 0.5)

  Run executable Java .jar files

• dep: libjdom1-java

  lightweight and fast library using XML

• dep: libswing-layout-java

  Extensions to Swing layout

Hämta brig

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
ppc64el	112,0 kbyte	412,0 kbyte	[filförteckning]