Paket: cufflinks (2.2.1+dfsg.1-10) [non-free]

[ Källkod: cufflinks  ]

Transcript assembly, differential expression and regulation for RNA-Seq

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.

This package provides the binary of cufflinks and associated tools, i.e. compress_gtf, cuffcompare, cuffdiff, cuffmerge, cuffnorm, cuffquant and gtf_to_sam.

Märken: Biologi: Nucleic Acids, Field: Biologi, field::biology:bioinformatics, implemented-in::c++, Role: Program, Works with: Biological Sequence

Andra paket besläktade med cufflinks

• dep: libboost-serialization1.83.0 (>= 1.83.0)

  serialization library for C++

• dep: libboost-thread1.83.0 (>= 1.83.0)

  portable C++ multi-threading

• dep: libc6 (>= 2.38)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 4.5)

  GCC stödbibliotek

• dep: libstdc++6 (>= 14)

  GNU standardbibliotek v3 för C++

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.2.3.3)

  Kompressionsbibliotek - körtidspaket

• rec: gffread

  GFF/GTF format conversions, region filtering, FASTA sequence extraction

• enh: tophat

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Arkitektur	Paketstorlek	Installerad storlek	Filer
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