Paket: maq (0.7.1-10)

[ Källkod: maq  ]

maps short fixed-length polymorphic DNA sequence reads to reference sequences

Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2.

Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, scope::utility, Purpose: Behöver ett märke till, Analysing, use::comparing, use::searching, Supports Format: Behöver ett märke till, works-with-format::plaintext, works-with::TODO

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• dep: libgcc-s1 (>= 4.2)

  GCC stödbibliotek

• dep: libstdc++6 (>= 5)

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• dep: zlib1g (>= 1:1.2.3.3)

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• sug: bwa

  Burrows-Wheeler Aligner

• sug: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Hämta maq

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Paketstorlek	Installerad storlek	Filer
i386	305,4 kbyte	581,0 kbyte	[filförteckning]