Paket: dnaclust (3-7 och andra)

[ Källkod: dnaclust  ]

tool for clustering millions of short DNA sequences

dnaclust is a tool for clustering large number of short DNA sequences. The clusters are created in such a way that the "radius" of each clusters is no more than the specified threshold.

The input sequences to be clustered should be in Fasta format. The id of each sequence is based on the first word of the seqeunce in the Fasta format. The first word is the prefix of the header up to the first occurrence of white space characters in the header.

Märken: Biologi: Fasta/Pearson, Nucleic Acids, Field: field::biology, field::biology:bioinformatics, Implemented in: C++, Role: role::program, works-with::biological-sequence

Andra paket besläktade med dnaclust

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.34)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  GCC stödbibliotek

• dep: libstdc++6 (>= 13.1)

  GNU standardbibliotek v3 för C++

Hämta dnaclust

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
armel	3-7+b3	101,5 kbyte	646,0 kbyte	[filförteckning]