Paket: sra-toolkit (3.0.9+dfsg-7)
Länkar för sra-toolkit
Debianresurser:
Hämta källkodspaketet sra-sdk:
Ansvariga:
- Debian Med Packaging Team (QA-sida, E-postarkiv)
- Charles Plessy (QA-sida)
- Andreas Tille (QA-sida)
- Aaron M. Ucko (QA-sida)
Externa resurser:
- Hemsida [github.com]
Liknande paket:
utilities for the NCBI Sequence Read Archive
Tools for reading the SRA archive, generally by converting individual runs into some commonly used format such as fastq.
The textual dumpers "sra-dump" and "vdb-dump" are provided in this release as an aid in visual inspection. It is likely that their actual output formatting will be changed in the near future to a stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON THE OUTPUT FORMAT SEEN IN THIS RELEASE.
Other tools distributed in this package are:
abi-dump, abi-load align-info bam-load cache-mgr cg-load copycat fasterq-dump fastq-dump, fastq-load helicos-load illumina-dump, illumina-load kar kdbmeta latf-load pacbio-load prefetch rcexplain remote-fuser sff-dump, sff-load sra-pileup, sra-sort, sra-stat, srapath srf-load test-sra vdb-config, vdb-copy, vdb-decrypt, vdb-encrypt, vdb-get, vdb-lock, vdb-passwd, vdb-unlock, vdb-validate
The "help" information will be improved in near future releases, and the tool options will become standardized across the set. More documentation will also be provided documentation on the NCBI web site.
Tool options may change in the next release. Version 1 tool options will remain supported wherever possible in order to preserve operation of any existing scripts.
Andra paket besläktade med sra-toolkit
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- dep: libc6 (>= 2.38)
- GNU C-bibliotek: Delade bibliotek
också ett virtuellt paket som tillhandahålls av libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC stödbibliotek
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- dep: libhdf5-103-1t64
- HDF5 C runtime files - serial version
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- dep: libmagic1t64 (>= 5.12)
- Recognize the type of data in a file using "magic" numbers - library
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- dep: libncbi-vdb3 (>= 3.0.9+dfsg)
- libraries for using data in the INSDC Sequence Read Archives
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- dep: libncbi-wvdb3 (>= 3.0.9+dfsg)
- virtual layer update module of ncbi-vdb library
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- dep: libstdc++6 (>= 14)
- GNU standardbibliotek v3 för C++
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- dep: libxml2 (>= 2.7.4)
- GNOME XML library
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- dep: zlib1g (>= 1:1.2.2)
- Kompressionsbibliotek - körtidspaket
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- rec: med-config
- Debian Med general config package
Hämta sra-toolkit
| Arkitektur | Paketstorlek | Installerad storlek | Filer |
|---|---|---|---|
| amd64 | 6.367,2 kbyte | 16.602,0 kbyte | [filförteckning] |