Paket: r-bioc-genomicfeatures (1.58.0+dfsg-1)

[ Källkod: r-bioc-genomicfeatures  ]

Experimentellt paket

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GNU R tools for making and manipulating transcript centric annotations

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

Andra paket besläktade med r-bioc-genomicfeatures

• dep: r-api-4.0

  Paketet inte tillgängligt

• dep: r-api-bioc-3.20

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.41.4)

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-biocgenerics (>= 0.51.2)

  generic functions for Bioconductor

• dep: r-bioc-biostrings

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.35.8)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicranges (>= 1.55.2)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.37.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.17.29)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• dep: r-cran-dbi

  GNU R package providing a generic database interface

• sug: r-bioc-annotationfilter

  facilities for filtering Bioconductor annotation resources

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-ensembldb

  GNU R utilities to create and use an Ensembl based annotation database

• sug: r-bioc-genomicalignments (>= 1.15.7)

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-org.hs.eg.db

  genome-wide annotation for Human

• sug: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-bioc-txdbmaker

  Tools for making TxDb objects from genomic annotations

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-markdown

  GNU R package providing R bindings to the Sundown Markdown rendering library

• sug: r-cran-runit

  GNU R package providing unit testing framework

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	908,0 kbyte	1.485,0 kbyte	[filförteckning]