Paket: barrnap (0.9+dfsg-1)

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Hemsida [www.vicbioinformatics.com]

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rapid ribosomal RNA prediction

Barrnap (BAsic Rapid Ribosomal RNA Predictor) predicts the location of ribosomal RNA genes in genomes. It supports bacteria (5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes (5S,5.8S,28S,18S).

It takes FASTA DNA sequence as input, and writes GFF3 as output. It uses the NHMMER tool that comes with HMMER 3.1 for HMM searching in RNA:DNA style. Multithreading is supported and one can expect roughly linear speed-ups with more CPUs.

Märken: Field: Biologi, Bioinformatics, Implemented in: implemented-in::perl, interface::commandline, Role: Program, Purpose: use::searching, works-with::biological-sequence

Andra paket besläktade med barrnap

beror

rekommenderar

föreslår

enhances

dep: bedtools

suite of utilities for comparing genomic features
dep: hmmer (>= 3.1)

profile hidden Markov models for protein sequence analysis
dep: perl

Larry Wall's Practical Extraction and Report Language

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