Paket: metastudent (2.0.1-6)

[ Källkod: metastudent  ]

predictor of Gene Ontology terms from protein sequence

Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict missing functional annotations through homology searches (BLAST).

All predicted functions correspond to Gene Ontology (GO) terms from the Molecular Function (MFO), the Biological Process (BPO) and the Cellular Component Ontology (CCO) and are associated with a reliability score.

Andra paket besläktade med metastudent

• dep: blast2

  transitional dummy package to ncbi-blast+-legacy

• dep: default-jre

  Standard Java or Java compatible Runtime

• dep: libfile-chdir-perl

  more sensible way to change directories

• dep: libgo-perl (>= 0.15-3)

  perl modules for GO and other OBO ontologies

• dep: libgraphviz-perl

  Perl interface to the GraphViz graphing tool

• dep: libipc-run-perl

  Perl module for running processes

• dep: metastudent-data (>= 2.0.0)

  predictor of Gene Ontology terms from protein sequence - data files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python

  interactive high-level object-oriented language (Python2 version)

Hämta metastudent

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Arkitektur	Paketstorlek	Installerad storlek	Filer
all	5.853,9 kbyte	94.959,0 kbyte	[filförteckning]