Paket: libfastahack0 (0.0+git20160702.bbc645f+dfsg-6)

[ Källkod: libfastahack  ]

library for indexing and sequence extraction from FASTA files (lib)

fastahack is a small application for indexing and extracting sequences and subsequences from FASTA files. The included Fasta.cpp library provides a FASTA reader and indexer that can be embedded into applications which would benefit from directly reading subsequences from FASTA files. The library automatically handles index file generation and use.

Features:

 * FASTA index (.fai) generation for FASTA files
 * Sequence extraction
 * Subsequence extraction
 * Sequence statistics (currently only entropy is provided)

Sequence and subsequence extraction use fseek64 to provide fastest-possible extraction without RAM-intensive file loading operations. This makes fastahack a useful tool for bioinformaticists who need to quickly extract many subsequences from a reference FASTA sequence.

This package contains the dynamic library.

Märken: Role: Shared Library

Andra paket besläktade med libfastahack0

• dep: libc6 (>= 2.4)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc1 (>= 1:3.0)

  GCC stödbibliotek

• dep: libstdc++6 (>= 5.2)

  GNU standardbibliotek v3 för C++

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Arkitektur	Paketstorlek	Installerad storlek	Filer
i386	24,5 kbyte	72,0 kbyte	[filförteckning]